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installation itk 4.13

Added by Gueguen Mikael over 3 years ago

voir la page itk

installation librairie eigen version 3.3

Added by Gueguen Mikael about 5 years ago

-- ************************************************************
-- ***    Eigen's unit tests configuration summary          ***
-- ************************************************************
--
-- Build type:        Release
-- Build site:        thor
-- Build string:      linux-2.6.32-431.17.1.el6.x86_64-icpc-15.0.3-fma-64bit-cxx11
-- Enabled backends:  UmfPack,  SuperLU,  METIS,  Boost.Multiprecision,  MPFR C++,
-- Disabled backends: Cholmod,  PaStiX,  SPQR,  Qt4 support,  GoogleHash,  Adolc,  fftw,  OpenGL,
-- Default order:     Column-major
-- Maximal matrix/vector size: 320
-- SSE2:              Using architecture defaults
-- SSE3:              Using architecture defaults
-- SSSE3:             Using architecture defaults
-- SSE4.1:            Using architecture defaults
-- SSE4.2:            Using architecture defaults
-- AVX:               Using architecture defaults
-- FMA:               ON
-- Altivec:           Using architecture defaults
-- VSX:               Using architecture defaults
-- ARM NEON:          Using architecture defaults
-- ARMv8 NEON:        Using architecture defaults
-- S390X ZVECTOR:     Using architecture defaults
-- C++11:             ON
-- CUDA:              OFF
--
CXX:               /opt/intel/composer_xe_2015.3.187/bin/intel64/icpc
 CXX_FLAGS:          -pedantic -Wall -Wextra -Wundef -Wchar-subscripts -Wnon-virtual-dtor -Wpointer-arith -Wwrite-strings -Wformat-security -Wshorten-64-to-32 -Wshadow -Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common -fstrict-aliasing -wd981 -wd2304 -strict-ansi -mfma -std=c++11
 Sparse lib flags:   ;/sw/lib/petsc/3.6/opt/mpt/lib/libumfpack.a;/sw/lib/petsc/3.6/opt/mpt/lib/libcolamd.a;/sw/lib/petsc/3.6/opt/mpt/lib/libamd.a;/sw/lib/petsc/3.6/opt/mpt/lib/libsuitesparseconfig.a;/sw/lib/petsc/3.6/opt/mpt/lib/libcholmod.a;eigen_blas;/sw/lib/petsc/3.6/opt/mpt/lib/libsuperlu_4.3.a;eigen_blas

installation petsc version 3.7.2

Added by Gueguen Mikael over 5 years ago

Compilation de lammps version 2016

Added by Gueguen Mikael over 5 years ago

arrêt cluster

Added by Gueguen Mikael over 5 years ago

Bonjour
Le cluster est actuellement arrêté pour permettre l'ajout de nouvelles lames.
Nous avons eu en parallèle un problème avec la mailing list "thor-users" et les mails d'avertissement ont été bloqués.
La machine sera remise en route dès que possible
Désolé de la gêne occasionnée.

Amicalement

script pour avoir la configuration des files définies

Added by Gueguen Mikael over 5 years ago

Usage

[gueguenm@thor admin_tools_git]$ pbs_queue -h
usage: pbs_queue [-h] [--verbose]

         Report queue information
         --------------------------------
             Col 1 : name of queue
             Col 2 : Max Possible Walltime
             Col 3 : Max number  of Possible running job for one user in this queue
             Col 4 : Max number of Possible running job for overall users in this queue
             Col 5 : Max number  of Possible Queued job for one user in this queue
             Col 6 : Max number  of Possible Queued job for overall users in this queue
             Col 7 : Priority Value for this queue
             Col 8 : number of Jobs (running and queued)
             Col 9 : number of Running jobs
             Col 10 : number of Queued jobs

optional arguments:
  -h, --help     show this help message and exit
  --verbose, -v  more information

[gueguenm@thor ~]$ /sw/tools/bin/pbs_queue
=====================================================================================
     Queue        Max       MaxRun    MaxRun  MaxQueued MaxQueued Priority  Current  Running  Queued
               Walltime     /user    forall     /user    forall             Jobs     Jobs     Jobs
=====================================================================================
     workq      --         0         0         0         0         0         0         0         0
    default     --         0         1         0         0         0        12         0        12
     large   30:00:00      1         2         1         2        100        0         0         0
  small_long 600:00:00     8         8         5        10        20        10         7         3
    medium   90:00:00      4         4         6        10        300        3         1         2
    normal   110:00:00     5        10        10        15        300       15         9         6
     small   96:00:00      0        10         4        10        60        10        10         0
     test    01:00:00      0         6         1         6        150        0         0         0
    R328002  720:00:00     0         0         0         0         0        14        10         4
    S328032  12:00:00      0         0         0         0         0         0         0         0
    R328225  4055:00:00     0         0         0         0         0         6         6         0
Sorting Jobs policy use : 5*job_requested_cpus+queue_priority+prio+eligible_time/3600.0

installation code saturne v4.0.4

Added by Gueguen Mikael over 5 years ago

Un module est disponible pour charger la configuration :
  • si module openmpi/1.10.1 chargée : utilisation de cette librairie
  • si module mpt/2.12 : utilisation de cette librairie
  • par défaut utilisation du compilateur intel et librairie mpt

Utilisation

[gueguenm@thor ~]$ module purge
[gueguenm@thor ~]$ module list
No Modulefiles Currently Loaded.
[gueguenm@thor ~]$ module load codes/saturne/4.0.4
[gueguenm@thor ~]$ module list
Currently Loaded Modulefiles:
  1) intel-cmkl-14/14.0.2.144   2) intel-mpi-5/5.1.0.079      3) codes/saturne/4.0.4
[gueguenm@thor ~]$ which code_saturne
/sw/codes/saturne/4.0.4/icc/code_saturne/bin/code_saturne

Merci à Alexandre Poux pour la compilation du code

installation git version 2.7

Added by Gueguen Mikael over 5 years ago

Pour l'utilisation de cette version, ajouter dans votre fichier .bash_profile :

export PATH=/sw/utils/git/bin:$PATH
export MANPATH=/sw/utils/git/share/man:$MANPATH

[gueguenm@thor gittest]$ export PATH=/sw/utils/git/bin:$PATH
[gueguenm@thor gittest]$ which git
/sw/utils/git/bin/git
[gueguenm@thor gittest]$ git --version
git version 2.7.0.25.gfc10eb5
[gueguenm@thor gittest]$ export MANPATH=/sw/utils/git/share/man:$MANPATH
[gueguenm@thor gittest]$ man git

installation compilateur intel 16

Added by Gueguen Mikael almost 6 years ago

Ensemble de la suite

L'ensemble est disponible via les modules (intel*16/*) :

[gueguenm@thor ~]$ module avail intel-

-------------------------------------- /sw/Modules/modulefiles --------------------------------------
intel-cc-12/12.1.7.367        intel-cmkl-16/16.0.1          intel-fc-15/15.3.187
intel-cc-13/13.1.2.183        intel-compilers-12/12.1.7.367 intel-fc-16/16.0.1
intel-cc-14/14.0.2.144        intel-compilers-13/13.1.2.183 intel-mpi-4/4.1.3.048
intel-cc-15/15.3.187          intel-compilers-14/14.0.2.144 intel-mpi-5/5.1.0.079
intel-cc-16/16.0.1            intel-compilers-15/15.3.187   intel-tools-14/14.0.2.144
intel-cmkl-12/12.1.7.367      intel-compilers-16/16.0.1     intel-tools-15/15.3.187
intel-cmkl-13/13.1.2.183      intel-fc-12/12.1.7.367        intel-tools-16/16.0.1
intel-cmkl-14/14.0.2.144      intel-fc-13/13.1.2.183
intel-cmkl-15/15.3.187        intel-fc-14/14.0.2.144
[gueguenm@thor ~]$ module load intel-tools-16/16.0.1
[gueguenm@thor ~]$ module list
Currently Loaded Modulefiles:
  1) intel-cc-16/16.0.1      3) intel-cmkl-16/16.0.1
  2) intel-fc-16/16.0.1      4) intel-tools-16/16.0.1

charger les compilateurs

[gueguenm@thor ~]$ module load intel-compilers-16/16.0.1
[gueguenm@thor ~]$ module list
Currently Loaded Modulefiles:
  1) intel-cc-16/16.0.1          2) intel-fc-16/16.0.1          3) intel-compilers-16/16.0.1

compilateur fortran

[gueguenm@thor ~]$ module load intel-fc-16/16.0.1

compilateur c/c++

[gueguenm@thor ~]$ module load intel-cc-16/16.0.1

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