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Calculateur VISION: Installation neper

Added by Gueguen Mikael about 1 year ago

Calculateur VISION: Installation MMG tools

Added by Gueguen Mikael about 1 year ago

Mmg is an open source software for simplicial remeshing. It provides 3 applications and 4 libraries:
plus d'info sur :
https://forge.univ-poitiers.fr/projects/calculateur-vision/wiki/Librairies_install%C3%A9es#MMG-remeshing-tool

Calculateur VISION: Installation LMGC90

Added by Gueguen Mikael over 1 year ago

LMGC90

LMGC90 is a free and open source software dedicated to multiple physics simulation
of discrete material and structures.

2 installed modules :
  • lmgc90/anac37_2021
  • lmgc90/sing_2021

SPIN Calcul: installation itk 4.13

Added by Gueguen Mikael almost 5 years ago

voir la page itk

SPIN Calcul: installation librairie eigen version 3.3

Added by Gueguen Mikael about 6 years ago

-- ************************************************************
-- ***    Eigen's unit tests configuration summary          ***
-- ************************************************************
--
-- Build type:        Release
-- Build site:        thor
-- Build string:      linux-2.6.32-431.17.1.el6.x86_64-icpc-15.0.3-fma-64bit-cxx11
-- Enabled backends:  UmfPack,  SuperLU,  METIS,  Boost.Multiprecision,  MPFR C++,
-- Disabled backends: Cholmod,  PaStiX,  SPQR,  Qt4 support,  GoogleHash,  Adolc,  fftw,  OpenGL,
-- Default order:     Column-major
-- Maximal matrix/vector size: 320
-- SSE2:              Using architecture defaults
-- SSE3:              Using architecture defaults
-- SSSE3:             Using architecture defaults
-- SSE4.1:            Using architecture defaults
-- SSE4.2:            Using architecture defaults
-- AVX:               Using architecture defaults
-- FMA:               ON
-- Altivec:           Using architecture defaults
-- VSX:               Using architecture defaults
-- ARM NEON:          Using architecture defaults
-- ARMv8 NEON:        Using architecture defaults
-- S390X ZVECTOR:     Using architecture defaults
-- C++11:             ON
-- CUDA:              OFF
--
CXX:               /opt/intel/composer_xe_2015.3.187/bin/intel64/icpc
 CXX_FLAGS:          -pedantic -Wall -Wextra -Wundef -Wchar-subscripts -Wnon-virtual-dtor -Wpointer-arith -Wwrite-strings -Wformat-security -Wshorten-64-to-32 -Wshadow -Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common -fstrict-aliasing -wd981 -wd2304 -strict-ansi -mfma -std=c++11
 Sparse lib flags:   ;/sw/lib/petsc/3.6/opt/mpt/lib/libumfpack.a;/sw/lib/petsc/3.6/opt/mpt/lib/libcolamd.a;/sw/lib/petsc/3.6/opt/mpt/lib/libamd.a;/sw/lib/petsc/3.6/opt/mpt/lib/libsuitesparseconfig.a;/sw/lib/petsc/3.6/opt/mpt/lib/libcholmod.a;eigen_blas;/sw/lib/petsc/3.6/opt/mpt/lib/libsuperlu_4.3.a;eigen_blas

SPIN Calcul: installation petsc version 3.7.2

Added by Gueguen Mikael over 6 years ago

SPIN Calcul: Compilation de lammps version 2016

Added by Gueguen Mikael over 6 years ago

SPIN Calcul: arrêt cluster

Added by Gueguen Mikael over 6 years ago

Bonjour
Le cluster est actuellement arrêté pour permettre l'ajout de nouvelles lames.
Nous avons eu en parallèle un problème avec la mailing list "thor-users" et les mails d'avertissement ont été bloqués.
La machine sera remise en route dès que possible
Désolé de la gêne occasionnée.

Amicalement

SPIN Calcul: script pour avoir la configuration des files définies

Added by Gueguen Mikael over 6 years ago

Usage

[gueguenm@thor admin_tools_git]$ pbs_queue -h
usage: pbs_queue [-h] [--verbose]

         Report queue information
         --------------------------------
             Col 1 : name of queue
             Col 2 : Max Possible Walltime
             Col 3 : Max number  of Possible running job for one user in this queue
             Col 4 : Max number of Possible running job for overall users in this queue
             Col 5 : Max number  of Possible Queued job for one user in this queue
             Col 6 : Max number  of Possible Queued job for overall users in this queue
             Col 7 : Priority Value for this queue
             Col 8 : number of Jobs (running and queued)
             Col 9 : number of Running jobs
             Col 10 : number of Queued jobs

optional arguments:
  -h, --help     show this help message and exit
  --verbose, -v  more information

[gueguenm@thor ~]$ /sw/tools/bin/pbs_queue
=====================================================================================
     Queue        Max       MaxRun    MaxRun  MaxQueued MaxQueued Priority  Current  Running  Queued
               Walltime     /user    forall     /user    forall             Jobs     Jobs     Jobs
=====================================================================================
     workq      --         0         0         0         0         0         0         0         0
    default     --         0         1         0         0         0        12         0        12
     large   30:00:00      1         2         1         2        100        0         0         0
  small_long 600:00:00     8         8         5        10        20        10         7         3
    medium   90:00:00      4         4         6        10        300        3         1         2
    normal   110:00:00     5        10        10        15        300       15         9         6
     small   96:00:00      0        10         4        10        60        10        10         0
     test    01:00:00      0         6         1         6        150        0         0         0
    R328002  720:00:00     0         0         0         0         0        14        10         4
    S328032  12:00:00      0         0         0         0         0         0         0         0
    R328225  4055:00:00     0         0         0         0         0         6         6         0
Sorting Jobs policy use : 5*job_requested_cpus+queue_priority+prio+eligible_time/3600.0

SPIN Calcul: installation code saturne v4.0.4

Added by Gueguen Mikael almost 7 years ago

Un module est disponible pour charger la configuration :
  • si module openmpi/1.10.1 chargée : utilisation de cette librairie
  • si module mpt/2.12 : utilisation de cette librairie
  • par défaut utilisation du compilateur intel et librairie mpt

Utilisation

[gueguenm@thor ~]$ module purge
[gueguenm@thor ~]$ module list
No Modulefiles Currently Loaded.
[gueguenm@thor ~]$ module load codes/saturne/4.0.4
[gueguenm@thor ~]$ module list
Currently Loaded Modulefiles:
  1) intel-cmkl-14/14.0.2.144   2) intel-mpi-5/5.1.0.079      3) codes/saturne/4.0.4
[gueguenm@thor ~]$ which code_saturne
/sw/codes/saturne/4.0.4/icc/code_saturne/bin/code_saturne

Merci à Alexandre Poux pour la compilation du code

1 2 (1-10/12)

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